/SGE2/bin/lx-amd64/qsub -v JSOC_r10 -e /tmp28/jsocprod/HARPS/definitive/cron_files/2025.10.23.elog -o /tmp28/jsocprod/HARPS/definitive/cron_files/2025.10.23.olog -N DefHarps -q k.q /tmp28/jsocprod/HARPS/definitive/cron_files/DefHarps.2025.10.23.csh
Warning: no access to tty (Bad file descriptor).
Thus no job control in this shell.
TERM=linux
SGE_CELL=default
PATH=/SGE2/bin:/SGE2/bin/lx-amd64:/home/jsoc/releases/jsoc-v10.0.3/bin/linux_avx:/home/jsoc/releases/jsoc-v10.0.3/scripts:/home/jsoc/bin/linux_avx:/tmp/2084695.1.k.q:/usr/local/bin:/bin:/usr/bin:/usr/local/perl:/usr/local/bin:/usr/bsd:/bin:/usr/bin:/home/jim/ftp/progs:/usr/local/scripts:/usr/bin/X11:.:/SGE/bin/lx24-amd64
RUNLEVEL=3
runlevel=3
PWD=/home/jsocprod
LANGSH_SOURCED=1
SGE_EXECD_PORT=6445
LANG=en_US.UTF-8
SGE_QMASTER_PORT=6444
SGE_ROOT=/SGE2
PREVLEVEL=N
previous=N
CONSOLETYPE=vt
SHLVL=1
UPSTART_INSTANCE=
UPSTART_EVENTS=runlevel
UPSTART_JOB=rc
_=/SGE2/bin/lx-amd64/sge_execd
JSOC_r10=1
REQNAME=DefHarps
HOME=/home/jsocprod
SHELL=/bin/csh
USER=jsocprod
LOGNAME=jsocprod
JOB_NAME=DefHarps
JOB_SCRIPT=/SGE2/default/spool/cl2n024/job_scripts/2084695
SGE_BINARY_PATH=/SGE2/bin/lx-amd64
REQUEST=DefHarps
HOSTNAME=cl2n024
QUEUE=k.q
JOB_ID=2084695
ENVIRONMENT=BATCH
ARC=lx-amd64
NQUEUES=1
NSLOTS=1
NHOSTS=1
RESTARTED=0
TMPDIR=/tmp/2084695.1.k.q
TMP=/tmp/2084695.1.k.q
SGE_O_HOME=/home/jsocprod
SGE_O_LOGNAME=jsocprod
SGE_O_PATH=/home/jsoc/releases/jsoc-v10.0.3/bin/linux_avx:/home/jsoc/releases/jsoc-v10.0.3/scripts:/home/jsoc/bin/linux_avx:/usr/lib64/qt-3.3/bin:/usr/bin:/bin:/usr/local/perl:/usr/local/bin:/usr/bsd:/bin:/usr/bin:/home/jim/ftp/progs:/usr/local/scripts:/usr/bin/X11:.
SGE_O_SHELL=/bin/sh
SGE_O_MAIL=/var/spool/mail/jsocprod
SGE_O_HOST=solar3.stanford.edu
SGE_O_WORKDIR=/homeg/jsocprod
SGE_TASK_ID=undefined
SGE_TASK_FIRST=undefined
SGE_TASK_LAST=undefined
SGE_TASK_STEPSIZE=undefined
SGE_ARCH=lx-amd64
SGE_ACCOUNT=sge
SGE_JOB_SPOOL_DIR=/SGE2/default/spool/cl2n024/active_jobs/2084695.1
SGE_STDIN_PATH=/dev/null
SGE_STDOUT_PATH=/tmp28/jsocprod/HARPS/definitive/cron_files/2025.10.23.olog
SGE_STDERR_PATH=/tmp28/jsocprod/HARPS/definitive/cron_files/2025.10.23.elog
SGE_CWD_PATH=/home/jsocprod
HOSTTYPE=x86_64-linux
VENDOR=unknown
OSTYPE=linux
MACHTYPE=x86_64
GROUP=humans
HOST=cl2n024
MAIL=/var/spool/mail/jsocprod
LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.tbz=01;31:*.tbz2=01;31:*.bz=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.axa=01;36:*.oga=01;36:*.spx=01;36:*.xspf=01;36:
CVS_RSH=ssh
GDL_PATH=+/usr/share/gnudatalanguage
G_BROKEN_FILENAMES=1
MODULESHOME=/usr/share/Modules
MODULEPATH=/usr/share/Modules/modulefiles:/etc/modulefiles
LOADEDMODULES=
DISPLAY=unix:0.0
JSOCENVSOURCED=1
JSOC_MACHINE=linux_avx
MACHINE=linux_avx
JSOC_DBUSER=production
PAGER=less
JSOC_WARNICC=-Wall -wd1418 -wd1419 -wd310 -wd279 -wd981 -Wno-comment
PGOPTIONS=--client-min-messages=warning
DRMS_INSTALL_DIR=/home/jsoc/releases/jsoc-v10.0.3
DRMS_BINS_INSTALL_DIR=/home/jsoc/releases/jsoc-v10.0.3/bin/linux_avx
DRMS_INCS_INSTALL_DIR=/home/jsoc/releases/jsoc-v10.0.3/include
DRMS_LIBS_INSTALL_DIR=/home/jsoc/releases/jsoc-v10.0.3/lib/linux_avx
DRMS_PARAMS_INSTALL_DIR=/home/jsoc/releases/jsoc-v10.0.3/include/base
DRMS_ROOT_DIR=/homec/akoufos/Workspace/Solar/Testing/Git-conversions/testtesttest
DRMS_SCRS_INSTALL_DIR=/home/jsoc/releases/jsoc-v10.0.3/scripts
DRMS_SRC_INSTALL_DIR=/home/jsoc/releases/jsoc-v10.0.3/src
WORKFLOW_ROOT=/home/jsoc/releases/jsoc-v10.0.3/src/workflow
WORKFLOW_DATA=/home/jsoc/pipeline/
WORKFLOW_IMG_ROOT=/home/jsoc/hmi
DRMS_TABLE_DIR=/home/jsoc/cvs/TBL_JSOC
PNAME=cl2n024
SUMPGPORT=5434
JAVA_HOME=/usr/java
EDITOR=vi
MORE=-cs
PRINTER=pacol
LC_ALL=C
SUMSERVER=k1
MANPATH=/SGE2/man:/SGE/man:/usr/share/catman:/usr/share/man:/usr/catman:/usr/man:/usr/local/man:/home/jim/STAGING/man:/usr/pubsw/man
OMP_NUM_THREADS=1
KMP_BLOCKTIME=10
SGE_CLUSTER_NAME=p6444
track_and_ingest_mharp.sh: Invoked as: /home/jsoc/releases/jsoc-v10.0.3/scripts/track_and_ingest_mharp.sh -m /tmp28/jsocprod/HARPS/definitive hmi.Marmask_720s[2025.10.02_00:12:00_TAI-2025.10.03_00:00:37_TAI] hmi.Mharp_720s hmi.Mharp_log_720s
modified job name of job 2084695
modified job name of job 2084695
track_and_ingest_mharp.sh: Staging masks.
track_and_ingest_mharp.sh: Finished staging masks.
track_and_ingest_mharp.sh: Looking up T_REC boundaries in mags.
track_and_ingest_mharp.sh: Processing from 2025.10.02_00:12:00_TAI to 2025.10.03_00:00:00_TAI
track_and_ingest_mharp.sh: Associated T_REC in `hmi.Mharp_log_720s' will be 2025.10.02_00:12:00_TAI
track_and_ingest_mharp.sh: Most recent prior ingest in `hmi.Mharp_log_720s' was 2025.10.01_00:12:00_TAI
track_and_ingest_mharp.sh: Ensuring no gaps in masks.
track_and_ingest_mharp.sh:   Checking for gaps between ingests.
track_and_ingest_mharp.sh:     Prior ingest final frame at 2025.10.02_00:00:00_TAI
track_and_ingest_mharp.sh:     Current start at 2025.10.02_00:12:00_TAI
track_and_ingest_mharp.sh:   Detect no gap between ingests.  Continuing.
track_and_ingest_mharp.sh:   Checking for gaps within the given T_REC range.
track_hmi_check_masks: Beginning.
track_hmi_check_masks: Examining sources and masks at 120 T_RECs.
track_hmi_check_masks: Examined NT = 120 T_RECs.
track_hmi_check_masks:   Of NT, found 119 valid (mag,pgram) pairs.
track_hmi_check_masks:   Of NT, found 119 valid masks.
track_hmi_check_masks: No unexplained absences of masks.
track_hmi_check_masks: Overall mask check passed: 0 missing <= 0 threshold.
track_hmi_check_masks: total time used: 0.933 s wall, 0.351 s cpu
track_hmi_check_masks: Done.
track_and_ingest_mharp.sh: Finished ensuring no gaps in masks.
track_and_ingest_mharp.sh: Beginning tracking.
track_and_ingest_mharp.sh: Executing command: /home/jsoc/releases/jsoc-v10.0.3/scripts/track_hmi_production_driver_stable.sh -r inf hmi.Marmask_720s[2025.10.02_00:12:00_TAI-2025.10.03_00:00:37_TAI] hmi.M_720s /tmp28/jsocprod/HARPS/definitive
track_hmi_production_driver_stable.sh: Invoked as: /home/jsoc/releases/jsoc-v10.0.3/scripts/track_hmi_production_driver_stable.sh -r inf hmi.Marmask_720s[2025.10.02_00:12:00_TAI-2025.10.03_00:00:37_TAI] hmi.M_720s /tmp28/jsocprod/HARPS/definitive
track_hmi_production_driver_stable.sh: Beginning.
Warning: No window system found.  Java option 'MWT' ignored

                            < M A T L A B (R) >
                  Copyright 1984-2010 The MathWorks, Inc.
                Version 7.11.0.584 (R2010b) 64-bit (glnxa64)
                              August 16, 2010

 
  To get started, type one of these: helpwin, helpdesk, or demo.
  For product information, visit www.mathworks.com.
 
>> >> 
track_hmi_production: Path info: now running: /home/jsoc/releases/jsoc-v10.0.3/src/mag/harp/libs/matlab/mfile-plain/track_hmi_production
track_hmi_production: Path info: track_hmi_loop is at: /home/jsoc/releases/jsoc-v10.0.3/src/mag/harp/libs/matlab/mfile-plain/track_hmi_loop.m

track_hmi_production: Tracking from "hmi.Marmask_720s[2025.10.02_00:12:00_TAI-2025.10.03_00:00:37_TAI]{mask}" and "hmi.M_720s".
track_hmi_production: Appending to  existing files in "/tmp28/jsocprod/HARPS/definitive".
track_hmi_production: Tracker parameters used:
          kwid: 1
          klat: 4
           tau: 0.0180
          tau2: 0.8000
        active: 2
          mode: 0
     final_num: -2
    final_time: 2
       maprate: 10.3972

track_hmi_production: Beginning tracking.
logging to </tmp/trec_loop.jsocprod.491082-814.log>
Restart: track ID = 13866, pending tracks = 21, history_retain = Inf
.............................................................merge: 2 16...................
..merge: 10 12.............merge: 6 13........................closing track 13848 of 408 chips [pending]
closing track 13844 of 516 chips [pending]
closing track 13827 of 891 chips [pending]
closing track 13831 of 845 chips [pending]
closing track 13836 of 138 chips [pending]
closing track 13865 of 126 chips [pending]
closing track 13847 of 351 chips [pending]
closing track 13859 of 231 chips [pending]
closing track 13849 of 399 chips [pending]
closing track 13853 of 216 chips [pending]
closing track 13855 of 296 chips [pending]
closing track 13861 of 11 chips [pending]
closing track 13835 of 583 chips [pending]
closing track 13845 of 462 chips [pending]
closing track 13863 of 95 chips [pending]
closing track 13801 of 1565 chips [pending]
closing track 13866 of 102 chips [pending]
closing track 13852 of 387 chips [pending]
closing track 13808 of 1392 chips [pending]

track_hmi_production: Completed tracking.
track_hmi_production: Done.

EXIT_STATUS_OK: clean exit from Matlab.
>> track_hmi_production_driver_stable.sh: Matlab call took 2313 seconds.
track_hmi_production_driver_stable.sh: Exiting OK.
track_hmi_production_driver_stable.sh: Done.
track_and_ingest_mharp.sh: Returned OK from command /home/jsoc/releases/jsoc-v10.0.3/scripts/track_hmi_production_driver_stable.sh.
track_and_ingest_mharp.sh: Finished tracking.
track_and_ingest_mharp.sh: Ingesting tracks.
track_and_ingest_mharp.sh: Executing command: /home/jsoc/releases/jsoc-v10.0.3/bin/linux_avx/ingest_mharp tmin=3 match=1 mag=hmi.M_720s root=/tmp28/jsocprod/HARPS/definitive/Tracks/jsoc lists=track-new.txt out=hmi.Mharp_720s mask=hmi.Marmask_720s verb=1
ingest_mharp: Ingesting from `/tmp28/jsocprod/HARPS/definitive/Tracks/jsoc'
ingest_mharp:   Got 1 list file from `track-new.txt'
ingest_mharp: Ingesting into `hmi.Mharp_720s'
ingest_mharp: Mask input series `hmi.Marmask_720s'
ingest_mharp: Got 16 tracker params from `/tmp28/jsocprod/HARPS/definitive/Tracks/jsoc/track-param.txt'
ingest_mharp: Got nHarp = 0.  Using nominal time range.  Setting pad = 0.
ingest_mharp: nHarp = 0; nRec = 0; nRec_all = 0; pad = 0.
ingest_mharp: t0 = 2011.02.14_00:00:00_TAI
ingest_mharp: t1 = 2011.02.14_00:00:00_TAI
ingest_mharp: Compiling 0 HARPs over 0 distinct T_REC's among 0 total T_REC's.
ingest_mharp: Setting T_REC times
ingest_mharp: Checking mag/mask availability and WCS across T_REC
ingest_mharp: 	T_REC scan: scanning image series for missing data
ingest_mharp: 	T_REC scan: 0 valid = 0 OK + 0 missing + 0 errors
ingest_mharp: Getting HARP id numbers
ingest_mharp: Getting detailed HARP info
ingest_mharp: 	Patch scan: finding patches eligible for ingest.
ingest_mharp: 	Patch scan: done.
ingest_mharp: elapsed time after indexing: 0.003 s wall, 0.001 s cpu
ingest_mharp: Loading match regions
ingest_mharp: No HARPs, using nominal time range for matches.
ingest_mharp: Match start = 2011.02.14_00:00:00_TAI
ingest_mharp: Match end   = 2011.02.14_00:00:00_TAI
ingest_mharp: Loading su_rsb.NOAA_ActiveRegions[2011.02.14_00:00:00_TAI-2011.02.14_00:00:00_TAI] (0 records)
ingest_mharp: No match ARs supplied/found, continuing.
ingest_mharp: Matching 0 HARPs to 0 Match-regions
ingest_mharp: Match dump: dumping to `/tmp28/jsocprod/HARPS/definitive/Tracks/jsoc/Match'.
ingest_mharp: Match dump: dump to `/tmp28/jsocprod/HARPS/definitive/Tracks/jsoc/Match' complete.
ingest_mharp: elapsed time after matching: 0.016 s wall, 0.003 s cpu
ingest_mharp: Ingestion summary -- across HARPs:
ingest_mharp:   (No HARPs ingested)
ingest_mharp: Ingestion summary -- across T_RECs:
ingest_mharp:   Considered NT = 0 T_RECs.
ingest_mharp:   Ingested across 0 T_RECs (< NT is OK).
ingest_mharp:   Ingest error in 0 T_RECs.
ingest_mharp:     Of NT, 0 T_RECs were: un-inspected [ok: data record not examined]
ingest_mharp:     Of NT, 0 T_RECs were: no mag present [ok: data gap]
ingest_mharp:     Of NT, 0 T_RECs were: mag present, but no mask [likely error: missing data]
ingest_mharp:     Of NT, 0 T_RECs were: mag and mask both present [ok]
ingest_mharp: Ingestion summary -- across all patches (HARP appearances):
ingest_mharp:   Processed NP = 0 patches over all HARPs and all T_RECs.
ingest_mharp:     Of NP, 0 patches were: eligible to ingest
ingest_mharp:     Of NP, 0 patches were: data gap in mags [ok]
ingest_mharp:     Of NP, 0 patches were: data missing in masks [likely error]
ingest_mharp:     Of NP, 0 patches were: omitted ingesting due to supplied options [ok]
ingest_mharp:     Of NP, 0 patches were: too short, typ. cosmic ray [ok]
ingest_mharp:   Attempted to ingest NP1 = 0 patches over all T_RECs.
ingest_mharp:     Of NP1, 0 patches were ingested successfully.
ingest_mharp:     Of NP1, 0 patches had ingestion errors.
ingest_mharp: total time used: 0.016 s wall, 0.003 s cpu
ingest_mharp: Exiting OK.
track_and_ingest_mharp.sh: Returned OK from command /home/jsoc/releases/jsoc-v10.0.3/bin/linux_avx/ingest_mharp.
track_and_ingest_mharp.sh: Finished ingesting tracks.
track_and_ingest_mharp.sh: Ingesting log and checkpoint to hmi.Mharp_log_720s[2025.10.02_00:12:00_TAI]
track_and_ingest_mharp.sh: Executing command: /home/jsoc/releases/jsoc-v10.0.3/bin/linux_avx/ingest_mharp_log root=/tmp28/jsocprod/HARPS/definitive/Tracks/jsoc log=track-and-ingest.log err=track-and-ingest.err out=hmi.Mharp_log_720s trec=2025.10.02_00:12:00_TAI
ingest_mharp_log: Beginning.
ingest_mharp_log:   Log filename: `/tmp28/jsocprod/HARPS/definitive/Tracks/jsoc/track-and-ingest.log'
ingest_mharp_log:   Error log filename: `/tmp28/jsocprod/HARPS/definitive/Tracks/jsoc/track-and-ingest.err'
ingest_mharp_log:   Checkpoint filename: `/tmp28/jsocprod/HARPS/definitive/Tracks/jsoc/track-post.mat'
ingest_mharp_log: Found log and checkpoint files.
ingest_mharp_log: Error log file does not exist: this is OK.
ingest_mharp_log: Got 16 tracker params from `/tmp28/jsocprod/HARPS/definitive/Tracks/jsoc/track-param.txt'
ingest_mharp_log: T_REC = 2025.10.02_00:12:00_TAI
ingest_mharp_log: ingested `/tmp28/jsocprod/HARPS/definitive/Tracks/jsoc/track-and-ingest.log'
ingest_mharp_log: No error log, set error log file to `/dev/null'.
ingest_mharp_log: ingested `/tmp28/jsocprod/HARPS/definitive/Tracks/jsoc/track-post.mat'
ingest_mharp_log: finished keywords, 0 keyword errors.
ingest_mharp_log: done.
track_and_ingest_mharp.sh: Returned OK from command /home/jsoc/releases/jsoc-v10.0.3/bin/linux_avx/ingest_mharp_log.
track_and_ingest_mharp.sh: Finished ingesting log and checkpoint.
track_and_ingest_mharp.sh: Clock time elapsed = 2317 seconds
track_and_ingest_mharp.sh: Status OK.
track_and_ingest_mharp.sh: Done.