/SGE2/bin/lx-amd64/qsub -v JSOC_r10 -e /tmp28/jsocprod/HARPS/definitive/cron_files/2025.11.07.elog -o /tmp28/jsocprod/HARPS/definitive/cron_files/2025.11.07.olog -N DefHarps -q k.q /tmp28/jsocprod/HARPS/definitive/cron_files/DefHarps.2025.11.07.csh
Warning: no access to tty (Bad file descriptor).
Thus no job control in this shell.
TERM=xterm-256color
SGE_CELL=default
PATH=/SGE2/bin:/SGE2/bin/lx-amd64:/home/jsoc/releases/jsoc-v10.0.3/bin/linux_avx:/home/jsoc/releases/jsoc-v10.0.3/scripts:/home/jsoc/bin/linux_avx:/tmp/2408035.1.k.q:/usr/local/bin:/bin:/usr/bin:/usr/local/perl:/usr/local/bin:/usr/bsd:/bin:/usr/bin:/home/jim/ftp/progs:/usr/local/scripts:/usr/bin/X11:.:/SGE/bin/lx24-amd64
PWD=/home/jsocprod
SGE_EXECD_PORT=6445
SGE_QMASTER_PORT=6444
SGE_ROOT=/SGE2
SHLVL=1
_=/SGE2/bin/lx-amd64/sge_execd
JSOC_r10=1
REQNAME=DefHarps
HOME=/home/jsocprod
SHELL=/bin/csh
USER=jsocprod
LOGNAME=jsocprod
JOB_NAME=DefHarps
JOB_SCRIPT=/SGE2/default/spool/cl2n023/job_scripts/2408035
SGE_BINARY_PATH=/SGE2/bin/lx-amd64
REQUEST=DefHarps
HOSTNAME=cl2n023
QUEUE=k.q
JOB_ID=2408035
ENVIRONMENT=BATCH
ARC=lx-amd64
NQUEUES=1
NSLOTS=1
NHOSTS=1
RESTARTED=0
TMPDIR=/tmp/2408035.1.k.q
TMP=/tmp/2408035.1.k.q
SGE_O_HOME=/home/jsocprod
SGE_O_LOGNAME=jsocprod
SGE_O_PATH=/home/jsoc/releases/jsoc-v10.0.3/bin/linux_avx:/home/jsoc/releases/jsoc-v10.0.3/scripts:/home/jsoc/bin/linux_avx:/usr/lib64/qt-3.3/bin:/usr/bin:/bin:/usr/local/perl:/usr/local/bin:/usr/bsd:/bin:/usr/bin:/home/jim/ftp/progs:/usr/local/scripts:/usr/bin/X11:.
SGE_O_SHELL=/bin/sh
SGE_O_MAIL=/var/spool/mail/jsocprod
SGE_O_HOST=solar3.stanford.edu
SGE_O_WORKDIR=/homeg/jsocprod
SGE_TASK_ID=undefined
SGE_TASK_FIRST=undefined
SGE_TASK_LAST=undefined
SGE_TASK_STEPSIZE=undefined
SGE_ARCH=lx-amd64
SGE_ACCOUNT=sge
SGE_JOB_SPOOL_DIR=/SGE2/default/spool/cl2n023/active_jobs/2408035.1
SGE_STDIN_PATH=/dev/null
SGE_STDOUT_PATH=/tmp28/jsocprod/HARPS/definitive/cron_files/2025.11.07.olog
SGE_STDERR_PATH=/tmp28/jsocprod/HARPS/definitive/cron_files/2025.11.07.elog
SGE_CWD_PATH=/home/jsocprod
HOSTTYPE=x86_64-linux
VENDOR=unknown
OSTYPE=linux
MACHTYPE=x86_64
GROUP=humans
HOST=cl2n023
MAIL=/var/spool/mail/jsocprod
LS_COLORS=rs=0:di=38;5;27:ln=38;5;51:mh=44;38;5;15:pi=40;38;5;11:so=38;5;13:do=38;5;5:bd=48;5;232;38;5;11:cd=48;5;232;38;5;3:or=48;5;232;38;5;9:mi=05;48;5;232;38;5;15:su=48;5;196;38;5;15:sg=48;5;11;38;5;16:ca=48;5;196;38;5;226:tw=48;5;10;38;5;16:ow=48;5;10;38;5;21:st=48;5;21;38;5;15:ex=38;5;34:*.tar=38;5;9:*.tgz=38;5;9:*.arj=38;5;9:*.taz=38;5;9:*.lzh=38;5;9:*.lzma=38;5;9:*.tlz=38;5;9:*.txz=38;5;9:*.zip=38;5;9:*.z=38;5;9:*.Z=38;5;9:*.dz=38;5;9:*.gz=38;5;9:*.lz=38;5;9:*.xz=38;5;9:*.bz2=38;5;9:*.tbz=38;5;9:*.tbz2=38;5;9:*.bz=38;5;9:*.tz=38;5;9:*.deb=38;5;9:*.rpm=38;5;9:*.jar=38;5;9:*.rar=38;5;9:*.ace=38;5;9:*.zoo=38;5;9:*.cpio=38;5;9:*.7z=38;5;9:*.rz=38;5;9:*.jpg=38;5;13:*.jpeg=38;5;13:*.gif=38;5;13:*.bmp=38;5;13:*.pbm=38;5;13:*.pgm=38;5;13:*.ppm=38;5;13:*.tga=38;5;13:*.xbm=38;5;13:*.xpm=38;5;13:*.tif=38;5;13:*.tiff=38;5;13:*.png=38;5;13:*.svg=38;5;13:*.svgz=38;5;13:*.mng=38;5;13:*.pcx=38;5;13:*.mov=38;5;13:*.mpg=38;5;13:*.mpeg=38;5;13:*.m2v=38;5;13:*.mkv=38;5;13:*.ogm=38;5;13:*.mp4=38;5;13:*.m4v=38;5;13:*.mp4v=38;5;13:*.vob=38;5;13:*.qt=38;5;13:*.nuv=38;5;13:*.wmv=38;5;13:*.asf=38;5;13:*.rm=38;5;13:*.rmvb=38;5;13:*.flc=38;5;13:*.avi=38;5;13:*.fli=38;5;13:*.flv=38;5;13:*.gl=38;5;13:*.dl=38;5;13:*.xcf=38;5;13:*.xwd=38;5;13:*.yuv=38;5;13:*.cgm=38;5;13:*.emf=38;5;13:*.axv=38;5;13:*.anx=38;5;13:*.ogv=38;5;13:*.ogx=38;5;13:*.aac=38;5;45:*.au=38;5;45:*.flac=38;5;45:*.mid=38;5;45:*.midi=38;5;45:*.mka=38;5;45:*.mp3=38;5;45:*.mpc=38;5;45:*.ogg=38;5;45:*.ra=38;5;45:*.wav=38;5;45:*.axa=38;5;45:*.oga=38;5;45:*.spx=38;5;45:*.xspf=38;5;45:
CVS_RSH=ssh
GDL_PATH=+/usr/share/gnudatalanguage
G_BROKEN_FILENAMES=1
LANG=en_US.UTF-8
MODULESHOME=/usr/share/Modules
MODULEPATH=/usr/share/Modules/modulefiles:/etc/modulefiles
LOADEDMODULES=
DISPLAY=unix:0.0
JSOCENVSOURCED=1
JSOC_MACHINE=linux_avx
MACHINE=linux_avx
JSOC_DBUSER=production
PAGER=less
JSOC_WARNICC=-Wall -wd1418 -wd1419 -wd310 -wd279 -wd981 -Wno-comment
PGOPTIONS=--client-min-messages=warning
DRMS_INSTALL_DIR=/home/jsoc/releases/jsoc-v10.0.3
DRMS_BINS_INSTALL_DIR=/home/jsoc/releases/jsoc-v10.0.3/bin/linux_avx
DRMS_INCS_INSTALL_DIR=/home/jsoc/releases/jsoc-v10.0.3/include
DRMS_LIBS_INSTALL_DIR=/home/jsoc/releases/jsoc-v10.0.3/lib/linux_avx
DRMS_PARAMS_INSTALL_DIR=/home/jsoc/releases/jsoc-v10.0.3/include/base
DRMS_ROOT_DIR=/homec/akoufos/Workspace/Solar/Testing/Git-conversions/testtesttest
DRMS_SCRS_INSTALL_DIR=/home/jsoc/releases/jsoc-v10.0.3/scripts
DRMS_SRC_INSTALL_DIR=/home/jsoc/releases/jsoc-v10.0.3/src
WORKFLOW_ROOT=/home/jsoc/releases/jsoc-v10.0.3/src/workflow
WORKFLOW_DATA=/home/jsoc/pipeline/
WORKFLOW_IMG_ROOT=/home/jsoc/hmi
DRMS_TABLE_DIR=/home/jsoc/cvs/TBL_JSOC
PNAME=cl2n023
SUMPGPORT=5434
JAVA_HOME=/usr/java
EDITOR=vi
MORE=-cs
PRINTER=pacol
LC_ALL=C
SUMSERVER=k1
MANPATH=/SGE2/man:/SGE/man:/usr/share/catman:/usr/share/man:/usr/catman:/usr/man:/usr/local/man:/home/jim/STAGING/man:/usr/pubsw/man
OMP_NUM_THREADS=1
KMP_BLOCKTIME=10
SGE_CLUSTER_NAME=p6444
track_and_ingest_mharp.sh: Invoked as: /home/jsoc/releases/jsoc-v10.0.3/scripts/track_and_ingest_mharp.sh -m /tmp28/jsocprod/HARPS/definitive hmi.Marmask_720s[2025.10.17_00:12:00_TAI-2025.10.18_00:00:37_TAI] hmi.Mharp_720s hmi.Mharp_log_720s
modified job name of job 2408035
modified job name of job 2408035
track_and_ingest_mharp.sh: Staging masks.
track_and_ingest_mharp.sh: Finished staging masks.
track_and_ingest_mharp.sh: Looking up T_REC boundaries in mags.
track_and_ingest_mharp.sh: Processing from 2025.10.17_00:12:00_TAI to 2025.10.18_00:00:00_TAI
track_and_ingest_mharp.sh: Associated T_REC in `hmi.Mharp_log_720s' will be 2025.10.17_00:12:00_TAI
track_and_ingest_mharp.sh: Most recent prior ingest in `hmi.Mharp_log_720s' was 2025.10.16_00:12:00_TAI
track_and_ingest_mharp.sh: Ensuring no gaps in masks.
track_and_ingest_mharp.sh:   Checking for gaps between ingests.
track_and_ingest_mharp.sh:     Prior ingest final frame at 2025.10.17_00:00:00_TAI
track_and_ingest_mharp.sh:     Current start at 2025.10.17_00:12:00_TAI
track_and_ingest_mharp.sh:   Detect no gap between ingests.  Continuing.
track_and_ingest_mharp.sh:   Checking for gaps within the given T_REC range.
track_hmi_check_masks: Beginning.
track_hmi_check_masks: Examining sources and masks at 120 T_RECs.
track_hmi_check_masks: Examined NT = 120 T_RECs.
track_hmi_check_masks:   Of NT, found 120 valid (mag,pgram) pairs.
track_hmi_check_masks:   Of NT, found 120 valid masks.
track_hmi_check_masks: No unexplained absences of masks.
track_hmi_check_masks: Overall mask check passed: 0 missing <= 0 threshold.
track_hmi_check_masks: total time used: 0.939 s wall, 0.378 s cpu
track_hmi_check_masks: Done.
track_and_ingest_mharp.sh: Finished ensuring no gaps in masks.
track_and_ingest_mharp.sh: Beginning tracking.
track_and_ingest_mharp.sh: Executing command: /home/jsoc/releases/jsoc-v10.0.3/scripts/track_hmi_production_driver_stable.sh -r inf hmi.Marmask_720s[2025.10.17_00:12:00_TAI-2025.10.18_00:00:37_TAI] hmi.M_720s /tmp28/jsocprod/HARPS/definitive
track_hmi_production_driver_stable.sh: Invoked as: /home/jsoc/releases/jsoc-v10.0.3/scripts/track_hmi_production_driver_stable.sh -r inf hmi.Marmask_720s[2025.10.17_00:12:00_TAI-2025.10.18_00:00:37_TAI] hmi.M_720s /tmp28/jsocprod/HARPS/definitive
track_hmi_production_driver_stable.sh: Beginning.
Warning: No window system found.  Java option 'MWT' ignored

                            < M A T L A B (R) >
                  Copyright 1984-2010 The MathWorks, Inc.
                Version 7.11.0.584 (R2010b) 64-bit (glnxa64)
                              August 16, 2010

 
  To get started, type one of these: helpwin, helpdesk, or demo.
  For product information, visit www.mathworks.com.
 
>> >> 
track_hmi_production: Path info: now running: /home/jsoc/releases/jsoc-v10.0.3/src/mag/harp/libs/matlab/mfile-plain/track_hmi_production
track_hmi_production: Path info: track_hmi_loop is at: /home/jsoc/releases/jsoc-v10.0.3/src/mag/harp/libs/matlab/mfile-plain/track_hmi_loop.m

track_hmi_production: Tracking from "hmi.Marmask_720s[2025.10.17_00:12:00_TAI-2025.10.18_00:00:37_TAI]{mask}" and "hmi.M_720s".
track_hmi_production: Appending to  existing files in "/tmp28/jsocprod/HARPS/definitive".
track_hmi_production: Tracker parameters used:
          kwid: 1
          klat: 4
           tau: 0.0180
          tau2: 0.8000
        active: 2
          mode: 0
     final_num: -2
    final_time: 2
       maprate: 10.3972

track_hmi_production: Beginning tracking.
logging to </tmp/trec_loop.jsocprod.491182-814.log>
Restart: track ID = 13915, pending tracks = 18, history_retain = Inf
.......merge: 2 7........................merge: 3 17..............merge: 2 9.....merge: 7 23..............................
...............merge: 9 13.........................closing track 13887 of 936 chips [pending]
closing track 13881 of 1098 chips [pending]
closing track 13891 of 754 chips [pending]
closing track 13892 of 722 chips [pending]
closing track 13915 of 107 chips [pending]
closing track 13913 of 207 chips [pending]
closing track 13918 of 40 chips [pending]
closing track 13895 of 511 chips [pending]
closing track 13883 of 1018 chips [pending]
closing track 13898 of 514 chips [pending]
closing track 13901 of 476 chips [pending]
closing track 13880 of 1166 chips [pending]
closing track 13903 of 467 chips [pending]
closing track 13908 of 357 chips [pending]
closing track 13909 of 340 chips [pending]
closing track 13910 of 158 chips [pending]
closing track 13911 of 271 chips [pending]
closing track 13912 of 113 chips [pending]

track_hmi_production: Completed tracking.
track_hmi_production: Done.

EXIT_STATUS_OK: clean exit from Matlab.
>> track_hmi_production_driver_stable.sh: Matlab call took 2457 seconds.
track_hmi_production_driver_stable.sh: Exiting OK.
track_hmi_production_driver_stable.sh: Done.
track_and_ingest_mharp.sh: Returned OK from command /home/jsoc/releases/jsoc-v10.0.3/scripts/track_hmi_production_driver_stable.sh.
track_and_ingest_mharp.sh: Finished tracking.
track_and_ingest_mharp.sh: Ingesting tracks.
track_and_ingest_mharp.sh: Executing command: /home/jsoc/releases/jsoc-v10.0.3/bin/linux_avx/ingest_mharp tmin=3 match=1 mag=hmi.M_720s root=/tmp28/jsocprod/HARPS/definitive/Tracks/jsoc lists=track-new.txt out=hmi.Mharp_720s mask=hmi.Marmask_720s verb=1
ingest_mharp: Ingesting from `/tmp28/jsocprod/HARPS/definitive/Tracks/jsoc'
ingest_mharp:   Got 1 list file from `track-new.txt'
ingest_mharp: Ingesting into `hmi.Mharp_720s'
ingest_mharp: Mask input series `hmi.Marmask_720s'
ingest_mharp: Got 16 tracker params from `/tmp28/jsocprod/HARPS/definitive/Tracks/jsoc/track-param.txt'
ingest_mharp: Got nHarp = 0.  Using nominal time range.  Setting pad = 0.
ingest_mharp: nHarp = 0; nRec = 0; nRec_all = 0; pad = 0.
ingest_mharp: t0 = 2011.02.14_00:00:00_TAI
ingest_mharp: t1 = 2011.02.14_00:00:00_TAI
ingest_mharp: Compiling 0 HARPs over 0 distinct T_REC's among 0 total T_REC's.
ingest_mharp: Setting T_REC times
ingest_mharp: Checking mag/mask availability and WCS across T_REC
ingest_mharp: 	T_REC scan: scanning image series for missing data
ingest_mharp: 	T_REC scan: 0 valid = 0 OK + 0 missing + 0 errors
ingest_mharp: Getting HARP id numbers
ingest_mharp: Getting detailed HARP info
ingest_mharp: 	Patch scan: finding patches eligible for ingest.
ingest_mharp: 	Patch scan: done.
ingest_mharp: elapsed time after indexing: 0.004 s wall, 0.001 s cpu
ingest_mharp: Loading match regions
ingest_mharp: No HARPs, using nominal time range for matches.
ingest_mharp: Match start = 2011.02.14_00:00:00_TAI
ingest_mharp: Match end   = 2011.02.14_00:00:00_TAI
ingest_mharp: Loading su_rsb.NOAA_ActiveRegions[2011.02.14_00:00:00_TAI-2011.02.14_00:00:00_TAI] (0 records)
ingest_mharp: No match ARs supplied/found, continuing.
ingest_mharp: Matching 0 HARPs to 0 Match-regions
ingest_mharp: Match dump: dumping to `/tmp28/jsocprod/HARPS/definitive/Tracks/jsoc/Match'.
ingest_mharp: Match dump: dump to `/tmp28/jsocprod/HARPS/definitive/Tracks/jsoc/Match' complete.
ingest_mharp: elapsed time after matching: 0.033 s wall, 0.004 s cpu
ingest_mharp: Ingestion summary -- across HARPs:
ingest_mharp:   (No HARPs ingested)
ingest_mharp: Ingestion summary -- across T_RECs:
ingest_mharp:   Considered NT = 0 T_RECs.
ingest_mharp:   Ingested across 0 T_RECs (< NT is OK).
ingest_mharp:   Ingest error in 0 T_RECs.
ingest_mharp:     Of NT, 0 T_RECs were: un-inspected [ok: data record not examined]
ingest_mharp:     Of NT, 0 T_RECs were: no mag present [ok: data gap]
ingest_mharp:     Of NT, 0 T_RECs were: mag present, but no mask [likely error: missing data]
ingest_mharp:     Of NT, 0 T_RECs were: mag and mask both present [ok]
ingest_mharp: Ingestion summary -- across all patches (HARP appearances):
ingest_mharp:   Processed NP = 0 patches over all HARPs and all T_RECs.
ingest_mharp:     Of NP, 0 patches were: eligible to ingest
ingest_mharp:     Of NP, 0 patches were: data gap in mags [ok]
ingest_mharp:     Of NP, 0 patches were: data missing in masks [likely error]
ingest_mharp:     Of NP, 0 patches were: omitted ingesting due to supplied options [ok]
ingest_mharp:     Of NP, 0 patches were: too short, typ. cosmic ray [ok]
ingest_mharp:   Attempted to ingest NP1 = 0 patches over all T_RECs.
ingest_mharp:     Of NP1, 0 patches were ingested successfully.
ingest_mharp:     Of NP1, 0 patches had ingestion errors.
ingest_mharp: total time used: 0.033 s wall, 0.004 s cpu
ingest_mharp: Exiting OK.
track_and_ingest_mharp.sh: Returned OK from command /home/jsoc/releases/jsoc-v10.0.3/bin/linux_avx/ingest_mharp.
track_and_ingest_mharp.sh: Finished ingesting tracks.
track_and_ingest_mharp.sh: Ingesting log and checkpoint to hmi.Mharp_log_720s[2025.10.17_00:12:00_TAI]
track_and_ingest_mharp.sh: Executing command: /home/jsoc/releases/jsoc-v10.0.3/bin/linux_avx/ingest_mharp_log root=/tmp28/jsocprod/HARPS/definitive/Tracks/jsoc log=track-and-ingest.log err=track-and-ingest.err out=hmi.Mharp_log_720s trec=2025.10.17_00:12:00_TAI
ingest_mharp_log: Beginning.
ingest_mharp_log:   Log filename: `/tmp28/jsocprod/HARPS/definitive/Tracks/jsoc/track-and-ingest.log'
ingest_mharp_log:   Error log filename: `/tmp28/jsocprod/HARPS/definitive/Tracks/jsoc/track-and-ingest.err'
ingest_mharp_log:   Checkpoint filename: `/tmp28/jsocprod/HARPS/definitive/Tracks/jsoc/track-post.mat'
ingest_mharp_log: Found log and checkpoint files.
ingest_mharp_log: Error log file does not exist: this is OK.
ingest_mharp_log: Got 16 tracker params from `/tmp28/jsocprod/HARPS/definitive/Tracks/jsoc/track-param.txt'
ingest_mharp_log: T_REC = 2025.10.17_00:12:00_TAI
ingest_mharp_log: ingested `/tmp28/jsocprod/HARPS/definitive/Tracks/jsoc/track-and-ingest.log'
ingest_mharp_log: No error log, set error log file to `/dev/null'.
ingest_mharp_log: ingested `/tmp28/jsocprod/HARPS/definitive/Tracks/jsoc/track-post.mat'
ingest_mharp_log: finished keywords, 0 keyword errors.
ingest_mharp_log: done.
track_and_ingest_mharp.sh: Returned OK from command /home/jsoc/releases/jsoc-v10.0.3/bin/linux_avx/ingest_mharp_log.
track_and_ingest_mharp.sh: Finished ingesting log and checkpoint.
track_and_ingest_mharp.sh: Clock time elapsed = 2460 seconds
track_and_ingest_mharp.sh: Status OK.
track_and_ingest_mharp.sh: Done.