/SGE2/bin/lx-amd64/qsub -v JSOC_r10 -e /tmp28/jsocprod/HARPS/definitive/cron_files/2026.01.19.elog -o /tmp28/jsocprod/HARPS/definitive/cron_files/2026.01.19.olog -N DefHarps -q k.q /tmp28/jsocprod/HARPS/definitive/cron_files/DefHarps.2026.01.19.csh Warning: no access to tty (Bad file descriptor). Thus no job control in this shell. TERM=linux SGE_CELL=default PATH=/SGE2/bin:/SGE2/bin/lx-amd64:/home/jsoc/releases/jsoc-v10.0.3/bin/linux_avx:/home/jsoc/releases/jsoc-v10.0.3/scripts:/home/jsoc/bin/linux_avx:/tmp/4139194.1.k.q:/usr/local/bin:/bin:/usr/bin:/usr/local/perl:/usr/local/bin:/usr/bsd:/bin:/usr/bin:/home/jim/ftp/progs:/usr/local/scripts:/usr/bin/X11:.:/SGE/bin/lx24-amd64 RUNLEVEL=3 runlevel=3 PWD=/home/jsocprod LANGSH_SOURCED=1 SGE_EXECD_PORT=6445 LANG=en_US.UTF-8 SGE_QMASTER_PORT=6444 SGE_ROOT=/SGE2 PREVLEVEL=N previous=N CONSOLETYPE=vt SHLVL=1 UPSTART_INSTANCE= UPSTART_EVENTS=runlevel UPSTART_JOB=rc _=/SGE2/bin/lx-amd64/sge_execd JSOC_r10=1 REQNAME=DefHarps HOME=/home/jsocprod SHELL=/bin/csh USER=jsocprod LOGNAME=jsocprod JOB_NAME=DefHarps JOB_SCRIPT=/SGE2/default/spool/cl2n021/job_scripts/4139194 SGE_BINARY_PATH=/SGE2/bin/lx-amd64 REQUEST=DefHarps HOSTNAME=cl2n021 QUEUE=k.q JOB_ID=4139194 ENVIRONMENT=BATCH ARC=lx-amd64 NQUEUES=1 NSLOTS=1 NHOSTS=1 RESTARTED=0 TMPDIR=/tmp/4139194.1.k.q TMP=/tmp/4139194.1.k.q SGE_O_HOME=/home/jsocprod SGE_O_LOGNAME=jsocprod SGE_O_PATH=/home/jsoc/releases/jsoc-v10.0.3/bin/linux_avx:/home/jsoc/releases/jsoc-v10.0.3/scripts:/home/jsoc/bin/linux_avx:/usr/lib64/qt-3.3/bin:/usr/bin:/bin:/usr/local/perl:/usr/local/bin:/usr/bsd:/bin:/usr/bin:/home/jim/ftp/progs:/usr/local/scripts:/usr/bin/X11:. SGE_O_SHELL=/bin/sh SGE_O_MAIL=/var/spool/mail/jsocprod SGE_O_HOST=solar3.stanford.edu SGE_O_WORKDIR=/homeg/jsocprod SGE_TASK_ID=undefined SGE_TASK_FIRST=undefined SGE_TASK_LAST=undefined SGE_TASK_STEPSIZE=undefined SGE_ARCH=lx-amd64 SGE_ACCOUNT=sge SGE_JOB_SPOOL_DIR=/SGE2/default/spool/cl2n021/active_jobs/4139194.1 SGE_STDIN_PATH=/dev/null SGE_STDOUT_PATH=/tmp28/jsocprod/HARPS/definitive/cron_files/2026.01.19.olog SGE_STDERR_PATH=/tmp28/jsocprod/HARPS/definitive/cron_files/2026.01.19.elog SGE_CWD_PATH=/home/jsocprod HOSTTYPE=x86_64-linux VENDOR=unknown OSTYPE=linux MACHTYPE=x86_64 GROUP=humans HOST=cl2n021 MAIL=/var/spool/mail/jsocprod LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.tbz=01;31:*.tbz2=01;31:*.bz=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.axa=01;36:*.oga=01;36:*.spx=01;36:*.xspf=01;36: CVS_RSH=ssh GDL_PATH=+/usr/share/gnudatalanguage G_BROKEN_FILENAMES=1 MODULESHOME=/usr/share/Modules MODULEPATH=/usr/share/Modules/modulefiles:/etc/modulefiles LOADEDMODULES= DISPLAY=unix:0.0 JSOCENVSOURCED=1 JSOC_MACHINE=linux_avx MACHINE=linux_avx JSOC_DBUSER=production PAGER=less JSOC_WARNICC=-Wall -wd1418 -wd1419 -wd310 -wd279 -wd981 -Wno-comment PGOPTIONS=--client-min-messages=warning DRMS_INSTALL_DIR=/home/jsoc/releases/jsoc-v10.0.3 DRMS_BINS_INSTALL_DIR=/home/jsoc/releases/jsoc-v10.0.3/bin/linux_avx DRMS_INCS_INSTALL_DIR=/home/jsoc/releases/jsoc-v10.0.3/include DRMS_LIBS_INSTALL_DIR=/home/jsoc/releases/jsoc-v10.0.3/lib/linux_avx DRMS_PARAMS_INSTALL_DIR=/home/jsoc/releases/jsoc-v10.0.3/include/base DRMS_ROOT_DIR=/homec/akoufos/Workspace/Solar/Testing/Git-conversions/testtesttest DRMS_SCRS_INSTALL_DIR=/home/jsoc/releases/jsoc-v10.0.3/scripts DRMS_SRC_INSTALL_DIR=/home/jsoc/releases/jsoc-v10.0.3/src WORKFLOW_ROOT=/home/jsoc/releases/jsoc-v10.0.3/src/workflow WORKFLOW_DATA=/home/jsoc/pipeline/ WORKFLOW_IMG_ROOT=/home/jsoc/hmi DRMS_TABLE_DIR=/home/jsoc/cvs/TBL_JSOC PNAME=cl2n021 SUMPGPORT=5434 JAVA_HOME=/usr/java EDITOR=vi MORE=-cs PRINTER=pacol LC_ALL=C SUMSERVER=k1 MANPATH=/SGE2/man:/SGE/man:/usr/share/catman:/usr/share/man:/usr/catman:/usr/man:/usr/local/man:/home/jim/STAGING/man:/usr/pubsw/man OMP_NUM_THREADS=1 KMP_BLOCKTIME=10 SGE_CLUSTER_NAME=p6444 track_and_ingest_mharp.sh: Invoked as: /home/jsoc/releases/jsoc-v10.0.3/scripts/track_and_ingest_mharp.sh -m /tmp28/jsocprod/HARPS/definitive hmi.Marmask_720s[2025.12.29_00:12:00_TAI-2025.12.30_00:00:37_TAI] hmi.Mharp_720s hmi.Mharp_log_720s modified job name of job 4139194 modified job name of job 4139194 track_and_ingest_mharp.sh: Staging masks. track_and_ingest_mharp.sh: Finished staging masks. track_and_ingest_mharp.sh: Looking up T_REC boundaries in mags. track_and_ingest_mharp.sh: Processing from 2025.12.29_00:12:00_TAI to 2025.12.30_00:00:00_TAI track_and_ingest_mharp.sh: Associated T_REC in `hmi.Mharp_log_720s' will be 2025.12.29_00:12:00_TAI track_and_ingest_mharp.sh: Most recent prior ingest in `hmi.Mharp_log_720s' was 2025.12.28_00:12:00_TAI track_and_ingest_mharp.sh: Ensuring no gaps in masks. track_and_ingest_mharp.sh: Checking for gaps between ingests. track_and_ingest_mharp.sh: Prior ingest final frame at 2025.12.29_00:00:00_TAI track_and_ingest_mharp.sh: Current start at 2025.12.29_00:12:00_TAI track_and_ingest_mharp.sh: Detect no gap between ingests. Continuing. track_and_ingest_mharp.sh: Checking for gaps within the given T_REC range. track_hmi_check_masks: Beginning. track_hmi_check_masks: Examining sources and masks at 120 T_RECs. track_hmi_check_masks: Examined NT = 120 T_RECs. track_hmi_check_masks: Of NT, found 120 valid (mag,pgram) pairs. track_hmi_check_masks: Of NT, found 120 valid masks. track_hmi_check_masks: No unexplained absences of masks. track_hmi_check_masks: Overall mask check passed: 0 missing <= 0 threshold. track_hmi_check_masks: total time used: 0.927 s wall, 0.348 s cpu track_hmi_check_masks: Done. track_and_ingest_mharp.sh: Finished ensuring no gaps in masks. track_and_ingest_mharp.sh: Beginning tracking. track_and_ingest_mharp.sh: Executing command: /home/jsoc/releases/jsoc-v10.0.3/scripts/track_hmi_production_driver_stable.sh -r inf hmi.Marmask_720s[2025.12.29_00:12:00_TAI-2025.12.30_00:00:37_TAI] hmi.M_720s /tmp28/jsocprod/HARPS/definitive track_hmi_production_driver_stable.sh: Invoked as: /home/jsoc/releases/jsoc-v10.0.3/scripts/track_hmi_production_driver_stable.sh -r inf hmi.Marmask_720s[2025.12.29_00:12:00_TAI-2025.12.30_00:00:37_TAI] hmi.M_720s /tmp28/jsocprod/HARPS/definitive track_hmi_production_driver_stable.sh: Beginning. Unable to open log file: /tmp/track_hmi_production_driver_stable.sh.1051.err Warning: No window system found. Java option 'MWT' ignored < M A T L A B (R) > Copyright 1984-2010 The MathWorks, Inc. Version 7.11.0.584 (R2010b) 64-bit (glnxa64) August 16, 2010 To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> >> track_hmi_production: Path info: now running: /home/jsoc/releases/jsoc-v10.0.3/src/mag/harp/libs/matlab/mfile-plain/track_hmi_production track_hmi_production: Path info: track_hmi_loop is at: /home/jsoc/releases/jsoc-v10.0.3/src/mag/harp/libs/matlab/mfile-plain/track_hmi_loop.m track_hmi_production: Tracking from "hmi.Marmask_720s[2025.12.29_00:12:00_TAI-2025.12.30_00:00:37_TAI]{mask}" and "hmi.M_720s". track_hmi_production: Appending to existing files in "/tmp28/jsocprod/HARPS/definitive". track_hmi_production: Tracker parameters used: kwid: 1 klat: 4 tau: 0.0180 tau2: 0.8000 active: 2 mode: 0 final_num: -2 final_time: 2 maprate: 10.3972 track_hmi_production: Beginning tracking. ERROR: Report follows. Error using ==> jsoc_trec_loop at 125 log file not writable Error in ==> track_hmi_production at 254 [fn,res,fnfail,fnlog]=jsoc_trec_loop(jsoc_ds, [smpl 1 1], 'track_hmi_loop', hooks); >> track_hmi_production_driver_stable.sh: Matlab call took 6 seconds. track_hmi_production_driver_stable.sh: Exiting with error. track_and_ingest_mharp.sh: Exiting with error: Filesystem state is OK (but inconsistent). track_and_ingest_mharp.sh: Can run again, but must use same (or longer) T_REC range. track_and_ingest_mharp.sh: Do *not* proceed to a new T_REC range.