/SGE2/bin/lx-amd64/qsub -v JSOC_r10 -e /tmp28/jsocprod/HARPS/definitive/cron_files/2026.06.09.elog -o /tmp28/jsocprod/HARPS/definitive/cron_files/2026.06.09.olog -N DefHarps -q k.q /tmp28/jsocprod/HARPS/definitive/cron_files/DefHarps.2026.06.09.csh Warning: no access to tty (Bad file descriptor). Thus no job control in this shell. TERM=dumb SGE_CELL=default PATH=/SGE2/bin:/SGE2/bin/lx-amd64:/home/jsoc/releases/jsoc-v10.0.5/bin/linux_avx:/home/jsoc/releases/jsoc-v10.0.5/scripts:/home/jsoc/bin/linux_avx:/tmp/7314943.1.k.q:/usr/local/bin:/bin:/usr/bin:/usr/local/perl:/usr/local/bin:/usr/bsd:/bin:/usr/bin:/home/jim/ftp/progs:/usr/local/scripts:/usr/bin/X11:.:/SGE/bin/lx24-amd64 PWD=/home/jsocprod SGE_EXECD_PORT=6445 SGE_QMASTER_PORT=6444 SGE_ROOT=/SGE2 SHLVL=1 _=/SGE2/bin/lx-amd64/sge_execd JSOC_r10=1 REQNAME=DefHarps HOME=/home/jsocprod SHELL=/bin/csh USER=jsocprod LOGNAME=jsocprod JOB_NAME=DefHarps JOB_SCRIPT=/SGE2/default/spool/cl2n029/job_scripts/7314943 SGE_BINARY_PATH=/SGE2/bin/lx-amd64 REQUEST=DefHarps HOSTNAME=cl2n029 QUEUE=k.q JOB_ID=7314943 ENVIRONMENT=BATCH ARC=lx-amd64 NQUEUES=1 NSLOTS=1 NHOSTS=1 RESTARTED=0 TMPDIR=/tmp/7314943.1.k.q TMP=/tmp/7314943.1.k.q SGE_O_HOME=/home/jsocprod SGE_O_LOGNAME=jsocprod SGE_O_PATH=/home/jsoc/releases/jsoc-v10.0.5/bin/linux_avx:/home/jsoc/releases/jsoc-v10.0.5/scripts:/home/jsoc/bin/linux_avx:/usr/lib64/qt-3.3/bin:/usr/bin:/bin:/usr/local/perl:/usr/local/bin:/usr/bsd:/bin:/usr/bin:/home/jim/ftp/progs:/usr/local/scripts:/usr/bin/X11:. SGE_O_SHELL=/bin/sh SGE_O_MAIL=/var/spool/mail/jsocprod SGE_O_HOST=solar3.stanford.edu SGE_O_WORKDIR=/homeg/jsocprod SGE_TASK_ID=undefined SGE_TASK_FIRST=undefined SGE_TASK_LAST=undefined SGE_TASK_STEPSIZE=undefined SGE_ARCH=lx-amd64 SGE_ACCOUNT=sge SGE_JOB_SPOOL_DIR=/SGE2/default/spool/cl2n029/active_jobs/7314943.1 SGE_STDIN_PATH=/dev/null SGE_STDOUT_PATH=/tmp28/jsocprod/HARPS/definitive/cron_files/2026.06.09.olog SGE_STDERR_PATH=/tmp28/jsocprod/HARPS/definitive/cron_files/2026.06.09.elog SGE_CWD_PATH=/home/jsocprod HOSTTYPE=x86_64-linux VENDOR=unknown OSTYPE=linux MACHTYPE=x86_64 GROUP=humans HOST=cl2n029 MAIL=/var/spool/mail/jsocprod LS_COLORS= CVS_RSH=ssh GDL_PATH=+/usr/share/gnudatalanguage G_BROKEN_FILENAMES=1 LANG=en_US.UTF-8 MODULESHOME=/usr/share/Modules MODULEPATH=/usr/share/Modules/modulefiles:/etc/modulefiles LOADEDMODULES= DISPLAY=unix:0.0 JSOCENVSOURCED=1 JSOC_MACHINE=linux_avx MACHINE=linux_avx JSOC_DBUSER=production PAGER=less JSOC_WARNICC=-Wall -wd1418 -wd1419 -wd310 -wd279 -wd981 -Wno-comment PGOPTIONS=--client-min-messages=warning DRMS_INSTALL_DIR=/home/jsoc/releases/jsoc-v10.0.5 DRMS_BINS_INSTALL_DIR=/home/jsoc/releases/jsoc-v10.0.5/bin/linux_avx DRMS_INCS_INSTALL_DIR=/home/jsoc/releases/jsoc-v10.0.5/include DRMS_LIBS_INSTALL_DIR=/home/jsoc/releases/jsoc-v10.0.5/lib/linux_avx DRMS_PARAMS_INSTALL_DIR=/home/jsoc/releases/jsoc-v10.0.5/include/base DRMS_ROOT_DIR=/homeg/jsoc/git-repo/JSOC-orig DRMS_SCRS_INSTALL_DIR=/home/jsoc/releases/jsoc-v10.0.5/scripts DRMS_SRC_INSTALL_DIR=/home/jsoc/releases/jsoc-v10.0.5/src WORKFLOW_ROOT=/home/jsoc/releases/jsoc-v10.0.5/src/workflow WORKFLOW_DATA=/home/jsoc/pipeline/ WORKFLOW_IMG_ROOT=/home/jsoc/hmi DRMS_TABLE_DIR=/home/jsoc/cvs/TBL_JSOC PNAME=cl2n029 SUMPGPORT=5434 JAVA_HOME=/usr/java EDITOR=vi MORE=-cs PRINTER=pacol LC_ALL=C SUMSERVER=k1 MANPATH=/SGE2/man:/SGE/man:/usr/share/catman:/usr/share/man:/usr/catman:/usr/man:/usr/local/man:/home/jim/STAGING/man:/usr/pubsw/man OMP_NUM_THREADS=1 KMP_BLOCKTIME=10 SGE_CLUSTER_NAME=p6444 track_and_ingest_mharp.sh: Invoked as: /home/jsoc/releases/jsoc-v10.0.5/scripts/track_and_ingest_mharp.sh -m /tmp28/jsocprod/HARPS/definitive hmi.Marmask_720s[2026.05.19_00:12:00_TAI-2026.05.20_00:00:37_TAI] hmi.Mharp_720s hmi.Mharp_log_720s modified job name of job 7314943 modified job name of job 7314943 track_and_ingest_mharp.sh: Staging masks. track_and_ingest_mharp.sh: Finished staging masks. track_and_ingest_mharp.sh: Looking up T_REC boundaries in mags. track_and_ingest_mharp.sh: Processing from 2026.05.19_00:12:00_TAI to 2026.05.20_00:00:00_TAI track_and_ingest_mharp.sh: Associated T_REC in `hmi.Mharp_log_720s' will be 2026.05.19_00:12:00_TAI track_and_ingest_mharp.sh: Most recent prior ingest in `hmi.Mharp_log_720s' was 2026.05.18_00:12:00_TAI track_and_ingest_mharp.sh: Ensuring no gaps in masks. track_and_ingest_mharp.sh: Checking for gaps between ingests. track_and_ingest_mharp.sh: Prior ingest final frame at 2026.05.19_00:00:00_TAI track_and_ingest_mharp.sh: Current start at 2026.05.19_00:12:00_TAI track_and_ingest_mharp.sh: Detect no gap between ingests. Continuing. track_and_ingest_mharp.sh: Checking for gaps within the given T_REC range. track_hmi_check_masks: Beginning. track_hmi_check_masks: Examining sources and masks at 120 T_RECs. track_hmi_check_masks: Examined NT = 120 T_RECs. track_hmi_check_masks: Of NT, found 120 valid (mag,pgram) pairs. track_hmi_check_masks: Of NT, found 120 valid masks. track_hmi_check_masks: No unexplained absences of masks. track_hmi_check_masks: Overall mask check passed: 0 missing <= 0 threshold. track_hmi_check_masks: total time used: 0.945 s wall, 0.354 s cpu track_hmi_check_masks: Done. track_and_ingest_mharp.sh: Finished ensuring no gaps in masks. track_and_ingest_mharp.sh: Beginning tracking. track_and_ingest_mharp.sh: Executing command: /home/jsoc/releases/jsoc-v10.0.5/scripts/track_hmi_production_driver_stable.sh -r inf hmi.Marmask_720s[2026.05.19_00:12:00_TAI-2026.05.20_00:00:37_TAI] hmi.M_720s /tmp28/jsocprod/HARPS/definitive track_hmi_production_driver_stable.sh: Invoked as: /home/jsoc/releases/jsoc-v10.0.5/scripts/track_hmi_production_driver_stable.sh -r inf hmi.Marmask_720s[2026.05.19_00:12:00_TAI-2026.05.20_00:00:37_TAI] hmi.M_720s /tmp28/jsocprod/HARPS/definitive track_hmi_production_driver_stable.sh: Beginning. Warning: No window system found. Java option 'MWT' ignored < M A T L A B (R) > Copyright 1984-2010 The MathWorks, Inc. Version 7.11.0.584 (R2010b) 64-bit (glnxa64) August 16, 2010 To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> >> track_hmi_production: Path info: now running: /home/jsoc/releases/jsoc-v10.0.5/src/mag/harp/libs/matlab/mfile-plain/track_hmi_production track_hmi_production: Path info: track_hmi_loop is at: /home/jsoc/releases/jsoc-v10.0.5/src/mag/harp/libs/matlab/mfile-plain/track_hmi_loop.m track_hmi_production: Tracking from "hmi.Marmask_720s[2026.05.19_00:12:00_TAI-2026.05.20_00:00:37_TAI]{mask}" and "hmi.M_720s". track_hmi_production: Appending to existing files in "/tmp28/jsocprod/HARPS/definitive". track_hmi_production: Tracker parameters used: kwid: 1 klat: 4 tau: 0.0180 tau2: 0.8000 active: 2 mode: 0 final_num: -2 final_time: 2 maprate: 10.3972 track_hmi_production: Beginning tracking. logging to Restart: track ID = 14691, pending tracks = 12, history_retain = Inf ...........................................merge: 5 15..................................... ...........merge: 6 9.............................closing track 14682 of 519 chips [pending] closing track 14684 of 449 chips [pending] closing track 14689 of 253 chips [pending] closing track 14683 of 513 chips [pending] closing track 14679 of 685 chips [pending] closing track 14688 of 339 chips [pending] closing track 14675 of 877 chips [pending] closing track 14690 of 244 chips [pending] closing track 14696 of 15 chips [pending] closing track 14676 of 734 chips [pending] closing track 14692 of 75 chips [pending] closing track 14686 of 432 chips [pending] closing track 14667 of 1372 chips [pending] closing track 14687 of 420 chips [pending] closing track 14694 of 57 chips [pending] closing track 14695 of 37 chips [pending] track_hmi_production: Completed tracking. track_hmi_production: Done. EXIT_STATUS_OK: clean exit from Matlab. >> track_hmi_production_driver_stable.sh: Matlab call took 1553 seconds. track_hmi_production_driver_stable.sh: Exiting OK. track_hmi_production_driver_stable.sh: Done. track_and_ingest_mharp.sh: Returned OK from command /home/jsoc/releases/jsoc-v10.0.5/scripts/track_hmi_production_driver_stable.sh. track_and_ingest_mharp.sh: Finished tracking. track_and_ingest_mharp.sh: Ingesting tracks. track_and_ingest_mharp.sh: Executing command: /home/jsoc/releases/jsoc-v10.0.5/bin/linux_avx/ingest_mharp tmin=3 match=1 mag=hmi.M_720s root=/tmp28/jsocprod/HARPS/definitive/Tracks/jsoc lists=track-new.txt out=hmi.Mharp_720s mask=hmi.Marmask_720s verb=1 ingest_mharp: Ingesting from `/tmp28/jsocprod/HARPS/definitive/Tracks/jsoc' ingest_mharp: Got 1 list file from `track-new.txt' ingest_mharp: Ingesting into `hmi.Mharp_720s' ingest_mharp: Mask input series `hmi.Marmask_720s' ingest_mharp: Got 16 tracker params from `/tmp28/jsocprod/HARPS/definitive/Tracks/jsoc/track-param.txt' ingest_mharp: Got nHarp = 0. Using nominal time range. Setting pad = 0. ingest_mharp: nHarp = 0; nRec = 0; nRec_all = 0; pad = 0. ingest_mharp: t0 = 2011.02.14_00:00:00_TAI ingest_mharp: t1 = 2011.02.14_00:00:00_TAI ingest_mharp: Compiling 0 HARPs over 0 distinct T_REC's among 0 total T_REC's. ingest_mharp: Setting T_REC times ingest_mharp: Checking mag/mask availability and WCS across T_REC ingest_mharp: T_REC scan: scanning image series for missing data ingest_mharp: T_REC scan: 0 valid = 0 OK + 0 missing + 0 errors ingest_mharp: Getting HARP id numbers ingest_mharp: Getting detailed HARP info ingest_mharp: Patch scan: finding patches eligible for ingest. ingest_mharp: Patch scan: done. ingest_mharp: elapsed time after indexing: 0.003 s wall, 0.001 s cpu ingest_mharp: Loading match regions ingest_mharp: No HARPs, using nominal time range for matches. ingest_mharp: Match start = 2011.02.14_00:00:00_TAI ingest_mharp: Match end = 2011.02.14_00:00:00_TAI ingest_mharp: Loading su_rsb.NOAA_ActiveRegions[2011.02.14_00:00:00_TAI-2011.02.14_00:00:00_TAI] (0 records) ingest_mharp: No match ARs supplied/found, continuing. ingest_mharp: Matching 0 HARPs to 0 Match-regions ingest_mharp: Match dump: dumping to `/tmp28/jsocprod/HARPS/definitive/Tracks/jsoc/Match'. ingest_mharp: Match dump: dump to `/tmp28/jsocprod/HARPS/definitive/Tracks/jsoc/Match' complete. ingest_mharp: elapsed time after matching: 0.016 s wall, 0.003 s cpu ingest_mharp: Ingestion summary -- across HARPs: ingest_mharp: (No HARPs ingested) ingest_mharp: Ingestion summary -- across T_RECs: ingest_mharp: Considered NT = 0 T_RECs. ingest_mharp: Ingested across 0 T_RECs (< NT is OK). ingest_mharp: Ingest error in 0 T_RECs. ingest_mharp: Of NT, 0 T_RECs were: un-inspected [ok: data record not examined] ingest_mharp: Of NT, 0 T_RECs were: no mag present [ok: data gap] ingest_mharp: Of NT, 0 T_RECs were: mag present, but no mask [likely error: missing data] ingest_mharp: Of NT, 0 T_RECs were: mag and mask both present [ok] ingest_mharp: Ingestion summary -- across all patches (HARP appearances): ingest_mharp: Processed NP = 0 patches over all HARPs and all T_RECs. ingest_mharp: Of NP, 0 patches were: eligible to ingest ingest_mharp: Of NP, 0 patches were: data gap in mags [ok] ingest_mharp: Of NP, 0 patches were: data missing in masks [likely error] ingest_mharp: Of NP, 0 patches were: omitted ingesting due to supplied options [ok] ingest_mharp: Of NP, 0 patches were: too short, typ. cosmic ray [ok] ingest_mharp: Attempted to ingest NP1 = 0 patches over all T_RECs. ingest_mharp: Of NP1, 0 patches were ingested successfully. ingest_mharp: Of NP1, 0 patches had ingestion errors. ingest_mharp: total time used: 0.016 s wall, 0.003 s cpu ingest_mharp: Exiting OK. track_and_ingest_mharp.sh: Returned OK from command /home/jsoc/releases/jsoc-v10.0.5/bin/linux_avx/ingest_mharp. track_and_ingest_mharp.sh: Finished ingesting tracks. track_and_ingest_mharp.sh: Ingesting log and checkpoint to hmi.Mharp_log_720s[2026.05.19_00:12:00_TAI] track_and_ingest_mharp.sh: Executing command: /home/jsoc/releases/jsoc-v10.0.5/bin/linux_avx/ingest_mharp_log root=/tmp28/jsocprod/HARPS/definitive/Tracks/jsoc log=track-and-ingest.log err=track-and-ingest.err out=hmi.Mharp_log_720s trec=2026.05.19_00:12:00_TAI ingest_mharp_log: Beginning. ingest_mharp_log: Log filename: `/tmp28/jsocprod/HARPS/definitive/Tracks/jsoc/track-and-ingest.log' ingest_mharp_log: Error log filename: `/tmp28/jsocprod/HARPS/definitive/Tracks/jsoc/track-and-ingest.err' ingest_mharp_log: Checkpoint filename: `/tmp28/jsocprod/HARPS/definitive/Tracks/jsoc/track-post.mat' ingest_mharp_log: Found log and checkpoint files. ingest_mharp_log: Error log file does not exist: this is OK. ingest_mharp_log: Got 16 tracker params from `/tmp28/jsocprod/HARPS/definitive/Tracks/jsoc/track-param.txt' ingest_mharp_log: T_REC = 2026.05.19_00:12:00_TAI ingest_mharp_log: ingested `/tmp28/jsocprod/HARPS/definitive/Tracks/jsoc/track-and-ingest.log' ingest_mharp_log: No error log, set error log file to `/dev/null'. ingest_mharp_log: ingested `/tmp28/jsocprod/HARPS/definitive/Tracks/jsoc/track-post.mat' ingest_mharp_log: finished keywords, 0 keyword errors. ingest_mharp_log: done. track_and_ingest_mharp.sh: Returned OK from command /home/jsoc/releases/jsoc-v10.0.5/bin/linux_avx/ingest_mharp_log. track_and_ingest_mharp.sh: Finished ingesting log and checkpoint. track_and_ingest_mharp.sh: Clock time elapsed = 1556 seconds track_and_ingest_mharp.sh: Status OK. track_and_ingest_mharp.sh: Done.